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import collections
from varappx.common.genotypes import decode_int
from varappx.constants.filters import ALL_VARIANT_FILTER_NAMES
from varappx.main.filters.sort import Sort
from varappx.models.gemini import Variants, GeneDetailed
# For export to frontend
_variant_genotype_expose = {0: [0,0], 1: [0,1], 2: [None,None], ... |
"""
`icclim.models.frequency` wraps the concept of pandas frequency in order to resample
time series. `slice_mode` paramater of `icclim.index` is always converted to a
`Frequency`.
"""
import datetime
from enum import Enum
from typing import Any, Callable, List, Optional, Tuple, Union
import cftime
impor... |
"""Day 10: Monitoring Station"""
from collections import defaultdict, deque
from functools import partial
from math import atan2, gcd, sqrt
from typing import DefaultDict, Deque, Iterable, Iterator, List, NamedTuple, Set, Tuple
import pytest
import aoc
DAY = 10
class Location(NamedTuple):
across: int
down:... |
import json
import logging
import binascii
from hashlib import sha256
from string import hexdigits
from torba.client.baseaccount import BaseAccount
from torba.client.basetransaction import TXORef
log = logging.getLogger(__name__)
def validate_claim_id(claim_id):
if not len(claim_id) == 40:
raise Except... |
# coding=utf-8
# Copyright 2020 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... |
#!/usr/bin/env python3
# TODO: Rewrite to remove unnecessary features; this program will only ever
# handle metadata.json version numbers.
"""
Increment a version number in a JSON file.
The JSON must have a top-level "version" key, as either a float or an int.
Usage:
python increment.py metadata.json -i 0.1 -O
... |
import re
from services import Boto3Service
from nodes import Node, ServiceNodes
from boto3_docs_parser import Boto3DocsParser, boto3_session, parser
import os
import boto3
from pprint import pprint
from collections import namedtuple
from itertools import combinations
from services import is_method_attr_in_list, is_req... |
from flask import Flask, request,redirect, abort,render_template,session,copy_current_request_context
from flask import render_template, flash, redirect, session, url_for, request, g
from flask_login import LoginManager, login_user, current_user, UserMixin
from flask_socketio import SocketIO, emit, send
from flask_uplo... |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# import python libs
import re
import json
import argparse
import json
import random
from os import listdir
from os.path import isfile, join
from pprint import pprint as pp
from collections import deque
# import project libs
import create_annotated_corpus
# defining g... |
from viewstate import ViewState
from src import config
import requests_html
from datetime import datetime, timedelta
import re
base_url = "https://appiris.infofer.ro/MyTrainRO.aspx?tren={}"
def get_station_id_by_name(name):
if name in config.global_station_list:
return config.global_station_list[name]
... |
"""Code specifically used by Jinja for rendering HTML
from Jinja templates.
"""
# TODO: move all the model stuff that's templating into here
import re
import os
import copy
import datetime
import base64
from urllib.parse import urlparse
from typing import Tuple
from flask import request
from bs4 import BeautifulSoup... |
#!/usr/bin/env python2
# -*- coding: utf-8 -*-
'''
Licensed under the terms of the MIT License
https://github.com/luchko/QCodeEditor
@author: <NAME> (<EMAIL>)
Python Highlighting added by:
https://github.com/unihernandez22/QCodeEditor
@author: unihernandez22
Adapted to Binary Ninja by:
@author: <NAME> (https://github... |
import base64
import flask
from marshmallow import ValidationError
import sqlalchemy as sa
from . import meta
from .exceptions import ApiError
from .utils import if_none, iter_validation_errors
# -----------------------------------------------------------------------------
class PaginationBase(object):
def get... |
import yaml
import sys
from os import path
import tempfile
from subprocess import check_output
from os import listdir
from os.path import isfile, join
from shutil import copyfile
import json
import logging
global LOGGER
MANDATORY_GENERAL_PARAMETERS = [
'pr-name',
'branch-name',
'commit-message',
'git-add',
'play... |
"""This module provides a writer for serialising data to the local filesystem."""
import json
import os
import re
from csv import DictWriter
from deprecation import deprecated
from hashlib import sha256
from lxml import etree
from pandas import DataFrame
from polymatheia import __version__
class JSONWriter():
"... |
import sep
import numpy as np
import scarlet
from scarlet.wavelet import mad_wavelet, Starlet
from .utils import extract_obj, image_gaia_stars
from astropy.table import Table, Column
from astropy import units as u
from astropy.units import Quantity
from astropy.coordinates import SkyCoord
from kuaizi.mock import Data... |
# /usr/bin/python
# encoding=utf-8
import os
import sys
import click
import functools
def singleton(cls):
_instance = {}
def inner(*args, **kwargs):
if cls not in _instance:
_instance[cls] = cls(*args, **kwargs)
return _instance[cls]
return inner
# class singleton(object):
# ... |
#!/usr/bin/env python
import argparse
import csv
import datetime
import os
import pytz
import gspread
from oauth2client.service_account import ServiceAccountCredentials
from pydrive.auth import GoogleAuth
from pydrive.drive import GoogleDrive
from stravalib.client import Client
from stravalib.model import Activity
fr... |
# Copyright 2013-2021 The Salish Sea MEOPAR contributors
# and The University of British Columbia
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/... |
# Extrahiert die Transaktionen aus dem Mempool
def getTxnsFromPool(MasterObj):
rwo = list()
for i in MasterObj.mempool: rwo.append(i); MasterObj.mempool.remove(i); print('Transaction {} selected'.format(i.getTxHash()))
return rwo
# Gibt die Höhe aller Gebühren welche verwendet werden an
def getTra... |
#!/usr/bin/env python
import bz2
import gzip
import json
import optparse
import os
import shutil
import subprocess
import sys
import tarfile
import tempfile
import urllib.error
import urllib.parse
import urllib.request
import zipfile
from ftplib import FTP
CHUNK_SIZE = 2**20 # 1mb
def cleanup_before_exit(tmp_dir):
... |
import matplotlib.pyplot as plt
import numpy as np
import os
from scipy import stats
from transposonmapper.statistics import dataframe_from_pergenefile
def make_datafile(path_a,filelist_a,path_b,filelist_b):
"""Assembly the datafile name to analyze
Parameters
----------
path_a : str
Path o... |
"""
See: `libfuturize.main`
"""
from __future__ import (absolute_import, print_function, unicode_literals)
import json
import logging
import optparse
import os
import shutil
import sys
from lib2to3 import refactor
from lib2to3.main import warn
import future.utils
from do_py import DataObject, R
from do_py.common.mana... |
import torch
import argparse
import scipy
import numpy as np
import pickle
from deeprobust.graph.targeted_attack import Nettack
from deeprobust.graph.utils import *
from deeprobust.graph.data import Dataset
from deeprobust.graph.defense import *
from sklearn.preprocessing import normalize
from tqdm import tqdm
from sc... |
#!/usr/bin/python3.8
"""
Genetic Algorithm to maximize surveillance over a population for AI Assignment.
Author: Sam (eremus-dev)
Repo: https://github.com/eremus-dev
"""
import math
from collections import Counter
from typing import List, Dict
import numpy as np
import matplotlib.pyplot as plt
from test_pop import te... |
import copy as _copy
import math as _math
import os as _os
import cv2 as _cv2
import numpy as _np
from PIL import Image as _IMG
from easytorch.utils.logger import *
"""
##################################################################################################
Very useful image related utilities
##############... |
# python3
# Copyright 2021 InstaDeep Ltd. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applic... |
#!/usr/bin/env python
import argparse, sys, math
# covalent radius to decide a bond. bond length: r1+r2
radius = {" H": 0.25,
" N": 0.65,
" C": 0.70,
" O": 0.60,
" P": 1.00,
" S": 1.00,
"NA": 1.80,
"CL": 1.00
}
elebd_radius = {" N": 1.5,... |
import os
import sys
import socket
import asyncio
import time
import types
import threading
from functools import partial
from collections import OrderedDict
import signal as signal
from typing import Any, Callable, Union
try:
import uvloop
uvloop.install()
except ImportError:
uvloop = None
import tornado.... |
from decimal import Decimal
import csv
from datetime import datetime
from imap_tools import MailBox, AND
from django.conf import settings
from django.http import HttpResponse
from django.shortcuts import render, get_object_or_404
from django.views.generic import CreateView, UpdateView, FormView, TemplateView
from dja... |
import numpy as np
import eqsig
from liquepy.element.models import ShearTest
from liquepy.element import assess
def test_with_one_cycle_no_dissipation():
strs = np.array([0, -1, -2, -3, -4, -3, -2, -1, 0, 1, 2, 3, 4, 3, 2, 1, 0])
tau = np.array([0, -2, -4, -6, -8, -6, -4, -2, 0, 2, 4, 6, 8, 6, 4, 2, 0])
... |
# -*- coding: utf-8 -*-
import pandas as pd
import re
import pickle
from sklearn.feature_extraction.text import CountVectorizer, TfidfTransformer
import numpy as np
from dl_architecture import make_charvec, build_model
from keras.callbacks import ModelCheckpoint
from keras import backend as K
from sklearn.preprocessi... |
# http://hg.openjdk.java.net/jdk6/jdk6/jdk/raw-file/tip/src/share/demo/jvmti/hprof/manual.html
path = "/Users/huangjinfu/Downloads/hpr/h1j.hprof"
TYPE_LEN = {
2: 4, # object
4: 1, # boolean
5: 2, # char
6: 4, # float
7: 8, # double
8: 1, # byte
9: 2, # short
10: 4, # int
11:... |
"""-----------------------------------------------------------------------------
Name: positional_accuracy.py
Purpose: Statistically summarizes positional accuracy values that are stored
in a field within a feature class.
Description: This tool statistically summarizes the positional accuracy values
tha... |
import datetime
import json
from django.contrib.auth import logout as auth_logout
from django.contrib.auth.decorators import login_required
from django.http import JsonResponse, HttpResponse
from django.shortcuts import get_object_or_404, redirect, render
from django.views.decorators.cache import never_cache
from djan... |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#
# ade:
# Asynchronous Differential Evolution.
#
# Copyright (C) 2018-19 by <NAME>,
# http://edsuom.com/ade
#
# See edsuom.com for API documentation as well as information about
# Ed's background and other projects, software and otherwise.
#
# Licensed under the Apache Li... |
import pytest
from os.path import join
from EPPs.common import StepEPP
from tests.test_common import TestCommon, TestEPP, NamedMock
from unittest.mock import Mock, patch, PropertyMock
from scripts.convert_and_dispatch_genotypes import GenotypeConversion, UploadVcfToSamples
class TestGenotypeConversion(TestCommon):
... |
import requests
import pytest
import mock
import tempfile
import os
from datetime import datetime
from obs.libs import bucket
from werkzeug.datastructures import FileStorage
from obs.api.app.controllers.api import storage
def fake_resource(access_key, secret_key):
resouce = mock.Mock()
resouce.Bucket.return_... |
# -*- coding:utf-8 -*-
import re
import logging
import os.path
import argparse
import json
import sys
from collections import OrderedDict, namedtuple
try:
from pip.utils import get_installed_distributions
except ImportError:
import pkg_resources
def get_installed_distributions():
return pkg_resourc... |
# pip install pycocotools opencv-python opencv-contrib-python
# wget https://github.com/opencv/opencv_extra/raw/master/testdata/cv/ximgproc/model.yml.gz
import os
import copy
import time
import argparse
import contextlib
import multiprocessing
import numpy as np
import cv2
import cv2.ximgproc
import matplotlib.patc... |
# -*- coding: utf-8 -*-
# Copyright 2017-2019 ControlScan, Inc.
#
# This file is part of Cyphon Engine.
#
# Cyphon Engine is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, version 3 of the License.
#
# Cyphon En... |
"""
Utilities for building programs from assembly source files for simulated and physical hardware.
"""
import re
from assembly.exception import AssemblyException
from assembly.instruction import Instruction
def apply_macros(macro_dictionary, program_string):
"""
Apply macros to the source code.
:param... |
import numpy as np
import torch
import torch.utils.data as data
import torch.nn.functional as F
import os
import cv2
import math
import random
import json
import csv
import pickle
import os.path as osp
from glob import glob
import raft3d.projective_ops as pops
from . import frame_utils
from .augmentation import RGB... |
#!/usr/bin/env python3
import argparse
import os
import shutil
import re
from builder import Builder
from database_deployer import FlywayDatabaseDeployer
from token_fetcher import TokenFetcher
from web_deployer import WebDeployer
from web_static_deployer import WebStaticDeployer
from util import extract_zipfile, get_... |
from zipfile import ZipFile
import os
import pandas as pd
import seaborn as sns
import matplotlib.pyplot as plt
from wordcloud import WordCloud, STOPWORDS
from tqdm import tqdm
import nltk
import re
from nltk.tokenize import word_tokenize
# extract zip file
def extract_zip(file):
with ZipFile(file, "r") as zip:
... |
"""
Author: [<NAME>](https://github.com/russelljjarvis)
"""
import shelve
import streamlit as st
import os
import pandas as pd
import pickle
import streamlit as st
from holoviews import opts, dim
from collections import Iterable
import networkx
#import bokeh_chart
from auxillary_methods import author_to_coauthor_net... |
import streamlit as st
import pandas as pd
import numpy as np
import json
import pandas as pd
from pathlib import Path
from datetime import datetime,timedelta
import matplotlib.pyplot as plt
from plotly_calplot import calplot
import plotly.express as px
from utils import (
load_config,
save_config,
pretty... |
"""
Create a representation of the NK speedCoach data file.
Classes:
NKSession
NKDevice
NKSessionFile
Functions:
None
Misc variables:
None
"""
import pandas
from io import StringIO
class NKSession(object):
"""
A class to containing the session data obtained from a single NK SpeedCoach ... |
# Standard library imports
import datetime
import time
import json
import copy
# Third party imports
import traceback
import requests
from loguru import logger
import pymysql
# import requests
import paramiko
# Local application imports
from func.save_data import save_509_data
from utils import send_to_axxnr
from fun... |
import json
import os
import shutil
import subprocess
import sys
import tempfile
import unittest
sys.path.append("../main")
from algorithms import *
port = 2222
def sshd(**kwargs):
dirname = tempfile.mkdtemp()
confname = dirname + "/sshd_config"
logname = dirname + "/sshd.log"
with open(confname,... |
import numpy as num
import scipy.sparse.linalg as alg
import scipy.linalg as algnorm
import scipy.sparse as smat
import random
# Operacje grafowe - może wydzielić ?
def to_adiacency_row(neighbours, n):
row = num.zeros(n)
row[neighbours] = 1
return row
def graph_to_matrix(graph): # Tworzy macierz rzadką... |
# Copyright (c) Microsoft Corporation.
# Licensed under the MIT License.
from functools import partial
import torch
from torch import nn
from timm.models.layers import DropPath
from einops.layers.torch import Reduce
from .layers import DWConv, SPATIAL_FUNC, ChannelMLP, STEM_LAYER
from .misc import reshape2n... |
import os
import subprocess
import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.optim as optim
from torch.nn.functional import interpolate
from loguru import logger
from tqdm import tqdm
import numpy as np
import wandb
from draw_concat import draw_concat
from generate_noise import generate... |
# coding=utf-8
# ------------------------------------------------------------------------
# Created by <NAME> on 2013-03-20
# Copyright (c) 2013 <NAME>. All rights reserved.
# ------------------------------------------------------------------------
from __future__ import absolute_import
import json
import logging
t... |
"""
Author: ~wy (https://github.com/wy)
Date: 25/01/2019
Description:
A simulator for the Three Dice game (Sic Bo) played in Macau casinos and elsewhere.
Important simplification is that all three dice are treated equally
which makes the maths a bit easier.
Key concepts:
Criteria - does a dice configuration match a bet... |
#!/usr/bin/env python
import json
import os
import re
import numpy
from gem.cnvReport import BaseDocumentHtml,BaseStatistical
class BuildHtmlAssembly(BaseDocumentHtml):
"""Base Mapping step"""
def titleDocument(self):
'''Title Web Document'''
self.vContent.append(" <H1 id=\"title\"> <U>... |
import script
from script import *
import shlex
import edition
import layout
import query
import player
import test
import graph
import opendns
class Color(script.Script):
def __init__(self, console):
super(Color, self).__init__(console)
self.colors = {
"red" : [ 1.0, 0.0, 0.0, 1.0 ],
"green" : [ 0.0, ... |
#coding: utf-8
import requests
import AdvancedHTMLParser
import json
import datetime
import html
from unidecode import unidecode
# Placeholder, will be replaced by reference to main cfg object
# This is only to satisfy builtin vs code verifier
try:
cfg = None
cfg.teachermap_filename = None
except:
pass
print("SEMI... |
import ipywidgets as widgets
import ipywidgets
from traitlets import Unicode
import traitlets
from traittypes import Array
import logging
import numpy as np
from .serialize import array_cube_png_serialization, array_serialization
from .transferfunction import *
import warnings
logger = logging.getLogger("ipyvolume")
... |
import math
import os
import time
import numpy as np
from torch.utils.tensorboard import SummaryWriter
import utils.loss as loss
import utils.tensorboard as utb
def get_probs(length, exp):
probs = (np.arange(1, length + 1) / 100) ** exp
last_x = int(0.9 * length)
probs[last_x:] = probs[last_x]
retur... |
#!/usr/bin/env python3
"""
corrections.py: Script to apply corrections to the images.
"""
import os
from argparse import ArgumentParser
from datetime import date, datetime
from typing import Optional, Sequence
import numpy as np
from astropy.io import fits
from dresscode.utils import load_config
def main(argv: Op... |
"""Block.Io API backend.
Supports Bitcoin, Dogecoin and Litecoin on `block.io <https://block.io>`_ API.
The backend configuration takes following parameters.
:param class: Always ``cryptoassets.core.backend.blockio.BlockIo``
:param api_key: block.io API key
:param password: <PASSWORD>
:param network: one of ``btc... |
# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Routines related to the canonical Chandra ACA dark current model.
The model is based on smoothed twice-broken power-law fits of
dark current histograms from Jan-2007 though Aug-2017. This analysis
was done entirely with dark current maps scaled to -1... |
# -*- coding: utf-8 -*-
# Copyright 2018 <NAME> All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by ... |
"""
mixcoatl.admin.user
-------------------
Implements access to the DCM User API
"""
from mixcoatl.resource import Resource
from mixcoatl.decorators.lazy import lazy_property
from mixcoatl.decorators.validations import required_attrs
from mixcoatl.utils import camelize, camel_keys, uncamel_keys
import json
import tim... |
from altair.vegalite.v4 import schema
from altair.vegalite.v4.schema.channels import Tooltip
import pandas as pd
import altair as alt
import numpy as np
from queries import Pomodoro
THEME = 'magma'
# TO DO: Add docstings where needed
def get_current_date():
"""
Gets the current date to perform default
... |
import argparse
import multiprocessing
import os
import pickle
import subprocess
import sys
from random import randint
from time import sleep
import georasters as gr
import numpy as np
from osgeo import gdal, osr
def save_img(data, geotransform, proj, outPath, noDataValue=np.nan, split=False):
# Start the gdal d... |
# copytrue (c) 2020 PaddlePaddle Authors. All Rights Reserve.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... |
# https://www.jwz.org/doc/threading.html
# https://github.com/akuchling/jwzthreading
import re
from collections import deque
restrip_pat = re.compile("""(
(Re(\[\d+\])?:) | (\[ [^]]+ \])
\s*)+
""", re.IGNORECASE | re.VERBOSE)
class Container:
"""Contains a tree of messages.
Instance attributes:
.mes... |
#!/usr/bin/env python
'''
MonkeyTest -- test your hard drive read-write speed in Python
A simplistic script to show that such system programming
tasks are possible and convenient to be solved in Python
The file is being created, then written with random data, randomly read
and deleted, so the script doesn't waste your... |
# /usr/bin/env python3.5
# -*- mode: python -*-
# =============================================================================
# @@-COPYRIGHT-START-@@
#
# Copyright (c) 2020, Qualcomm Innovation Center, Inc. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification,... |
import logging
import types
from collections import defaultdict
from typing import (
Any,
Dict,
Iterator,
List,
Mapping,
Tuple,
Type,
Union,
)
from .setting import Setting, PropertySetting
from .setting_registry import registry
from .docreader import extract_doc_comments_from_class_or_m... |
#!/usr/bin/env python
#------------------------------------------------------------
# Purpose: Program to straight line parameters
# to data with errors in both coordinates. Compare
# the results with SciPy's ODR routine.
# Vog, 27 Nov, 2011
#----------------------------------------------------------... |
import numpy as np
import scipy
import cv2
def get_pixel_neighbors(height, width):
"""
Estimate the 4 neighbors of every pixel in an image
:param height: image height
:param width: image width
:return: pixel index - neighbor index lists
"""
pix_id = []
neighbor_id = []
for i in ra... |
import math
import torch
import numpy as np
import pandas as pd
import torch.nn as nn
def normal_pdf(x):
import math
return torch.exp(-0.5 * x**2) / math.sqrt(2 * math.pi)
def normal_cdf(y, h=0.01, tau=0.5):
# Approximation of Q-function given by López-Benítez & Casadevall (2011)
# based on a second-... |
# ******************************************************************************
# Copyright 2017-2018 Intel Corporation
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apa... |
from typing import List, Optional, Dict, Any
import logging
import os
import json
import glob
from fastapi import FastAPI, HTTPException, Header, Response, Body
from fastapi.responses import FileResponse
from fastapi.encoders import jsonable_encoder
from app.metadata import PaperStatus, Allocation
from app.annotation... |
import datetime
import asynctest.mock
import pytest
from exptools.time import (
utcnow, localnow,
as_local, as_utc,
format_utc, format_utc_short, format_local, format_local_short,
parse_utc, parse_local,
diff_sec,
format_sec, format_sec_fixed, format_sec_short,
job_elapsed_time,
format_job_count,
fo... |
# -*- coding: utf-8 -*-
"""
Created on Sun May 21 14:31:32 2017
@author: <NAME>
"""
import random
inf = 0
prime = 2**17-1
order = 131307
# remember to check isSingular(a,b,p) == False
a = 1
b = 6
# Uses the idea of squareAndMultiply to compute c*p quickly in E.
# Based on algorithm on p. 266 in course literatur... |
"""PFIM: Personal Finance Manager"""
import os
from queue import Queue
import sys
import sqlite3
import logging
import statistics
import functools
from datetime import date, timedelta
from enum import Enum, auto
from collections import namedtuple
from typing import List, Dict, Callable, Generator, Mapping, Union
## ... |
import pandas as pd
import numpy as np
from numpy import corrcoef
import matplotlib.pyplot as plt
from sklearn.feature_selection import chi2
from sklearn.feature_selection import f_classif
from math import *
plt.style.use('ggplot')
fig = plt.figure()
COUNTER = 1
#Return the category dictionary,categorical variables l... |
from copy import deepcopy
import torch
from torch import nn
import torch.nn.functional as F
import numpy as np
from apex import amp
from torch.cuda.amp import autocast as autocast
from transformers import BertModel, BertTokenizer
from util import text_processing
from collections import OrderedDict
from . import ops a... |
from typing import List, Set
from querio.db import data_accessor as da
from querio.ml import model
from querio.service.save_service import SaveService
from querio.ml.expression.cond import Cond
from querio.ml.expression.expression import Expression
from querio.queryobject import QueryObject
from querio.service.utils i... |
from database.imports import *
from database.models.base import Base
from database.models.mixins import HasNotes, HasMetaData, HasCiteables, HasTreeStructure, HasExperiments, HasProperties
###-----------------------------------
### Hardware inventory, aka rig parts
###-----------------------------------
class Hardw... |
# read README.md file on my GitHub. It walks you through the instalation of necessary
# libraries, helps you solve common errors and provides useful references ;)
# https://github.com/scraptechguy/SpeechCheck
# import library to report time in debug printing
import datetime
# import elements from libraries for Mi... |
import os
import requests
from urllib.error import URLError
from urllib.parse import urlparse
from urllib.request import urlopen
from luigi import Target, LocalTarget
from hashlib import sha1
from tasks.util import (query_cartodb, underscore_slugify, OBSERVATORY_PREFIX, OBSERVATORY_SCHEMA)
from tasks.meta import (OB... |
import sys
from PyQt4 import QtGui, QtCore
from pyqtgraph.Qt import QtGui, QtCore
import pyqtgraph as pg
import numpy
from math import sqrt, sin, cos, pi
from geometry.quaternion import Quaternion
class StripChart(QtGui.QWidget):
""" a class to implement a stripchart using the pyqtgraph plotting
utilities
... |
from typing import Tuple, Dict
import h5py
import pandas as pd
import numpy as np
from loguru import logger
from ruamel.yaml import YAML
from joblib import load, dump
from umda import EmbeddingModel
from sklearn.gaussian_process import GaussianProcessRegressor, kernels
from sklearn.neighbors import KNeighborsRegressor... |
#
# Copyright (c) 2018 ISP RAS (http://www.ispras.ru)
# Ivannikov Institute for System Programming of the Russian Academy of Sciences
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# h... |
import pandas as pd
import numpy as np
import sys
import matplotlib.pyplot as plt
import seaborn as sns
def plot_conservation(out_path):
"""
Plotting the fraction of conserved binding sites for Brn2, Ebf2 and
Onecut2, based on multiGPS and edgeR results from Aydin et al., 2019
(Nature Neurosciece: PMI... |
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# File name: tool_func.py
"""
Created on Thu Apr 23 17:39:40 2020
@author: Neo(<EMAIL>)
Some tool functions. The comment will be added when I am free.
"""
from myprogs.vsh.vsh_fit import rotgli_fit_4_table
from myprogs.catalog.pos_diff import radio_cat_diff_calc
from ... |
# | Copyright 2017 Karlsruhe Institute of Technology
# |
# | Licensed under the Apache License, Version 2.0 (the "License");
# | you may not use this file except in compliance with the License.
# | You may obtain a copy of the License at
# |
# | http://www.apache.org/licenses/LICENSE-2.0
# |
# | Unless required by ... |
# Copyright (c) 2020, <NAME>.
# All rights reserved. Distributed under the BSD License.
import csv
import gzip
import json
import logging
import os.path
import time
from enum import Enum
from typing import Optional, Generator, Dict, Callable, Tuple, Set, Any
import requests
_MEGABYTE = 1048576
#: Logger for all outp... |
import os # path
import sys # path
import yaml # safe_load, YAMLError
import glob # glob
import importlib # import_module
import pytest # skip
import warnings # warn
# For type hints only:
from typing import Union
from types import ModuleType
from _pytest.config import C... |
# Seenbot module.
from datetime import datetime
import json
from michiru import db, personalities
from michiru.modules import command, hook
_ = personalities.localize
## Module information.
__name__ = 'seenbot'
__author__ = 'Shiz'
__license__ = 'WTFPL'
__desc__ = 'Tells when someone was last seen.'
## Database stu... |
# Copyright 2016 The Johns Hopkins University Applied Physics Laboratory
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required ... |
"""
Requirements:
-----------
pyngrok==5.0.5
mlflow==1.15.0
pandas==1.2.3
numpy==1.19.3
scikit-learn==0.24.1
Examples of usege can be found in the url below:
https://nbviewer.jupyter.org/github/abreukuse/ml_utilities/blob/master/examples/experiments_management.ipynb
"""
import os
import mlflow
from pyngrok import ng... |
from utils import *
from block_descriptor import *
from Crypto.Cipher import AES
import hashlib
import cStringIO
import gzip
import json
import gzip_mod
import os
class Image:
def __init__(self, image_data, read=True):
self.stream = cStringIO.StringIO(image_data)
self.stream_len = le... |
#!/usr/bin/python
#
# Copyright (c) 2012 <NAME> <<EMAIL>>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify... |
import sys
import click
import numpy as np
import pandas as pd
import tensorflow as tf
import tensorflow.keras.backend as K
import tensorflow_probability as tfp
import statsmodels.api as sm
import xgboost as xgb
import matplotlib.pyplot as plt
import seaborn as sns
from abc import ABC, abstractmethod
from pathlib... |
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