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HBB Gene Perturbation Scoring
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Base-level sequence scoring for gene perturbation
AI & ML interests
Exploring foundation models for DNA and beyond 🧬
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Factorized Nucleotide Supervision
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Explore DNA tokenization and factorization
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Conditioning the base distributions: fix a base, the rest adapt
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Visualize DNA tokenization and conditional predictions
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Next-token prediction on a real sequence
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Predict the next DNA base in a given sequence
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Per-base, BPE, and 6-mer on the same DNA sequence
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Visualize DNA tokenization by base, BPE, and 6‑mer
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Prefix ambiguity, in a vocabulary that holds five plausible next tokens
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Explore DNA tokenization and model scoring
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Explore DNA model predictions and protein folding interactively